Cortex visualizations show react error #310

slamalu2 · November 22, 2022, 9:49am

Hi everyone,

I was wondering what might be causing this. I generated graphs for each participant using Cortex as per the documentation and when I click on the graph in the Data portal of the LAMP Dashboard (such as on the cortex.Screen Active button) an error #310 appears. I’ve uploaded a screenshot of the whole error.

We’ve tried updating Node.js to version 19, but that unfortunately didn’t fix it. Any help would be greatly appreciated.

Thanks!

clangholm · November 28, 2022, 8:39pm

What is the output in your notebook when you run the cortex functions?

slamalu2 · December 1, 2022, 3:03pm

I tried running the data quality script from GitHub: ./cortex/visualizations/run_data_quality.sh "researcher_id" and the output I got from it was:

[DEBUG:geos:<module>] Found GEOS DLL: <CDLL '/home/lukas/virtual_env/venv_with_python3.8/lib/python3.8/site-packages/Shapely.libs/libgeos_c-c8ec7514.so.1.16.1', handle 2a9cfa0 at 0x7f69b8fb45e0>, using it.
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[WARNING:connectionpool:urlopen] Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f69b8fe9580>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')': /participant/U3748598636/sensor_event?origin=lamp.accelerometer&from=1669386330000&to=1669472730000&limit=1
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.data_quality...
/home/lukas/virtual_env/venv_with_python3.8/lib/python3.8/site-packages/altair/utils/core.py:317: FutureWarning: iteritems is deprecated and will be removed in a future version. Use .items instead.
  for col_name, dtype in df.dtypes.iteritems():
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.step_count...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.step_count...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.step_count...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.step_count...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.step_count...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.step_count...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.step_count...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.screen_duration...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.screen_duration...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Using saved "cortex.screen_active"...
[INFO:feature_types:_primary_attach] Saving primary feature "cortex.screen_active"...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.hometime...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing secondary feature cortex.feature.hometime...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
[INFO:feature_types:_wrapper2] Processing primary feature "cortex.significant_locations"...
/home/lukas/virtual_env/venv_with_python3.8/lib/python3.8/site-packages/altair/utils/core.py:317: FutureWarning: iteritems is deprecated and will be removed in a future version. Use .items instead.
  for col_name, dtype in df.dtypes.iteritems():
[INFO:data_quality:data_quality] Run time: 29.76 minutes

clangholm · December 1, 2022, 3:24pm

Thank you for bringing this to my attention. We will work on a fix and will implement it in the next update.

slamalu2 · December 1, 2022, 3:47pm

Ok thank you very much

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Cortex visualizations show react error #310

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